Vision–Language–Action (VLA) models have shown promising capabilities for embodied intelligence, but most existing approaches rely on text-based chain-of-thought reasoning where visual inputs are treated as static context. This limits the ability of the model to actively revisit the environment and resolve ambiguities during long-horizon tasks. We propose VLA-Thinker, a thinking-with-image reasoning framework that models perception as a dynamically invocable reasoning action. Instead of relying on a single visual encoding, the model can actively query task-relevant visual regions through tool invocation during reasoning, enabling an interleaved perception–reasoning–action process. To train such a system, we introduce a two-stage training pipeline consisting of (1) an SFT cold-start phase with curated visual Chain-of-Thought data to activate structured reasoning and tool-use behaviors, and (2) GRPO-based reinforcement learning to align complete reasoning–action trajectories with task-level success. Extensive experiments on LIBERO and RoboTwin 2.0 benchmarks demonstrate that VLA-Thinker significantly improves manipulation performance, achieving 97.5% success rate on LIBERO and strong gains across long-horizon robotic tasks.